Isaac Fink

Nitrofurantoin Resistance | Alkaline Urine | Time Series Data | Proteeae Species | Microbiology Software

Prominent publications by Isaac Fink

Community-led, integrated, reproducible multi-omics with anvi’o

[ PUBLICATION ]

KOL Index score: 603

Big data abound in microbiology, but the workflows designed to enable researchers to interpret data can constrain the biological questions that can be asked. Five years after anvi’o was first published, this community-led multi-omics platform is maturing into an open software ecosystem that reduces constraints in ‘omics data analyses.

Also Ranks for: Computational Biology

BiomeHorizon: visualizing microbiome time series data in R

[ PUBLICATION ]

KOL Index score: 43 . Abstract Summary A key aspect of microbiome research is analysis of longitudinal dynamics using time series data. A method to visualize both the proportional and absolute change in the abundance of multiple taxa across multiple subjects over time is needed. We developed BiomeHorizon , an open-source R package that visualizes longitudinal compositional microbiome data using horizon plots. Availability and Implementation BiomeHorizon is available at ...

Key People For Nitrofurantoin Resistance

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Isaac Fink:Expert Impact

Concepts for whichIsaac Finkhas direct influence:Nitrofurantoin resistance, Alkaline urine, Time series data, Proteeae species, Microbiology software, Omics anvi, Bacteriuria cultures.

Isaac Fink:KOL impact

Concepts related to the work of other authors for whichfor which Isaac Fink has influence:Burkina faso, Trna modification dynamics, Environmental drivers, Gloeobacter species, Sunlit ocean, Dairy industries, Gulosibacter hominis.

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Clinical Research Internship Study Program, Mayo Clinic, Jacksonville, Florida. | Department of Computer Science, University of Chicago, Chicago, IL, USA | Department of Medicine, University of Chicago, Chicago, IL, USA